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"title": "ButyrateProducers2 dataframe", "topics": [ "ButyrateProducers2" ] }, { "page": "ButyrateProducers3", "title": "ButyrateProducers3 dataframe", "topics": [ "ButyrateProducers3" ] }, { "page": "checkResInfo", "title": "Checks whether the all the resources needed are included in the system information file (e.g. start value, washout rate etc)", "topics": [ "checkResInfo" ] }, { "page": "checkSolution", "title": "Checks whether the solution generated by the ODE solver contains negative values", "topics": [ "checkSolution" ] }, { "page": "checkStoichiom", "title": "Checks whether the stoichiometries in each MFG conserve mass within a specified tolerance If they do not then if reBalanceStoichiom=TRUE the stoichiometry will be adjusted", "topics": [ "checkStoichiom" ] }, { "page": "combineGrowthLimFuncDefault", "title": "combines the growth limitation functions and max growth rates to get the growth rate of strain", "topics": [ "combineGrowthLimFunc", "combineGrowthLimFuncDefault" ] 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"title": "networkDFfromMPoutput", "topics": [ "networkDFfromMPoutput" ] }, { "page": "NoButyFibreDeg", "title": "NoButyFibreDeg dataframe", "topics": [ "NoButyFibreDeg" ] }, { "page": "NoButyStarchDeg", "title": "NoButyStarchDeg dataframe", "topics": [ "NoButyStarchDeg" ] }, { "page": "pHcentreOfMass", "title": "Find the pH value which is the centre of mass of the pH limitation function (used for the pH trait)", "topics": [ "pHcentreOfMass" ] }, { "page": "pHFuncDefault", "title": "pH Function", "topics": [ "pHFunc", "pHFuncDefault" ] }, { "page": "pHLimFuncDefault", "title": "pH Limitation Function", "topics": [ "pHLimFunc", "pHLimFuncDefault" ] }, { "page": "plotMicrobes", "title": "Generic plotting of microbes over time", "topics": [ "plotMicrobes" ] }, { "page": "plotResources", "title": "Generic plotting of resources over time", "topics": [ "plotResources" ] }, { "page": "plotTraitChange", "title": "plot changes in trait over time", "topics": [ "plotTraitChange" ] }, { "page": 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